How useful this would be to yourself I don't know. But, in Options - Program Setup - Advanced Preferences. there is an option to 'Apply general property changes to all tools presets:''.
With this turned on, activating a tool, then selecting the layer. means all objects drawn 2d or 3d, will use that active layer. until you select a new layer.
However, all pre-sets will be treated the same, not just Layers. i.e pen colour, brush colour etc. If you normally have pen colour by layer, it shouldn't be a problem, but if you normally draw lines blue and circles green. then they will all be the same after ticking Apply general property changes.